Block-wise alignment of nucleotide sequences?

[Peter Frank]

Andreas Wilm wrote:

>What exactly do you mean by "block-wise alignment"?

I meant local alignment.

>Maybe Dialign is what you are looking for :
>http://bibiserv.techfak.uni-bielefeld.de/dialign/

And this program obviously does local alignments (from the website
"Here, DIALIGN was found to be the best method for local multiple
alignment."), so it may be suitable for my purposes. Thanks for the
link.

Peter