[Computational-biology] Blastall maximum hsp parameter

Khan, Anar Anar.Khan at agresearch.co.nz
Tue Dec 6 17:45:20 EST 2005


Is there an equivalent blastall parameter for the Wu-BLAST parameter
hspmax, which enables you to set the maximum number of hsps returned for
each subject sequence? I would like to set this value to unlimited, to
prevent seeing this error:

[blastall] WARNING:  [000.000]  BLp19_L3_50: Reached max 200 HSPs in
BlastSaveCurrentHsp, continuing with this limit

Thanks in advance.


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