[Computational-biology] Re: Point Specific Mutation Matrix vs. profile HMM ?

harald please_noSpam at gmx.de
Sun Feb 26 08:57:38 EST 2006


Hello,

thanks a lot for your quick and detailed answers.
The papers comparing PSI-Blast and HMM profiles and the one about the 
statistical theory were pretty interesting.

But since the database, which I want to search for homologs is very big 
(~3 Mio. sequences), I think that a tool like hmmsearch would be too slow.

Kind regards,
Harald



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