[Computational-biology] Blastall maximum hsp parameter

Jian YANG yang at chgb.org.cn
Tue Jul 11 23:39:50 EST 2006


Hi, Anar,

I found your former question about the blastall maximum hsp parameter by Google search since I also met the same problem today. Would you please let me know if you already had the answer. 

Thanks in advance.


Yours,


Jian

----- Original Message ----- 

Hi,

Is there an equivalent blastall parameter for the Wu-BLAST parameter
hspmax, which enables you to set the maximum number of hsps returned for
each subject sequence? I would like to set this value to unlimited, to
prevent seeing this error:

[blastall] WARNING:  [000.000]  BLp19_L3_50: Reached max 200 HSPs in
BlastSaveCurrentHsp, continuing with this limit

Thanks in advance.

Cheers,
Anar



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