IUBio

[Computational-biology] Help needed in philogenetic tree alignment and sequences identification

Michael Margulis via comp-bio%40net.bio.net (by margulis from gmail.com)
Sat Dec 22 11:56:34 EST 2007


Hello!
   I need help in phylogenetic tree alignment: I've got many 16S
rDNA sequences that were obtained from environmental samples. Sequences were
aligned using ClustalW and phylogenetic tree was produced using neighbour
joining method. The problem is that I don't know how to identify my
sequences. Blast doesn't make very good method for identification and I
don't know how to postion my tree and align it with the general philogenetic
tree...
 Any help will be appreciated...
 Thanks in advance.
    Michael.


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