Dear Michael,
I think you could probbably use Tree viewer instead. It would provide you the
sequences which you render as input. Infact, it does everything:
http://iubio.bio.indiana.edu/treeapp/treeprint-form.html
Secondly, incase, if you are not happy with above, you could use DIALIGN and
evolutionary relationship software at
http://bibiserv.techfak.uni-bielefeld.de/dialign/
I hope this helps
Prash
Prashanth Suravajhala
PhD Fellow
http://ruc.dk/~prash/
'Stand up for what is right!’ ~~ Gift the under-privileged children in new
year. Please visit http://www.cry.org
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Today's Topics:
1. Help needed in philogenetic tree alignment and sequences
identification (Michael Margulis)
----------------------------------------------------------------------
Message: 1
Date: Sat, 22 Dec 2007 18:56:34 +0200
From: "Michael Margulis" <margulis from gmail.com>
Subject: [Computational-biology] Help needed in philogenetic tree
alignment and sequences identification
To: comp-bio from magpie.bio.indiana.edu
Message-ID:
<7a2aa5bb0712220856v58578e7gf43b550363b8e590 from mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
Hello!
I need help in phylogenetic tree alignment: I've got many 16S
rDNA sequences that were obtained from environmental samples. Sequences were
aligned using ClustalW and phylogenetic tree was produced using neighbour
joining method. The problem is that I don't know how to identify my
sequences. Blast doesn't make very good method for identification and I
don't know how to postion my tree and align it with the general philogenetic
tree...
Any help will be appreciated...
Thanks in advance.
Michael.
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