FlyBase Update

FlyBase Project Members flybase at MORGAN.HARVARD.EDU
Wed Nov 1 11:59:36 EST 1995


FlyBase update.


The following files have been added or updated on the FlyBase
server at flybase.bio.indiana.edu/flybase, or are available thru
http://morgan.harvard.edu/

flybase/genes/gene-synonyms.txt
flybase/aberrations/aberration-synonyms.txt
flybase/nomenclature/transposons.txt
flybase/function/function.txt
flybase/extdb/external-databases.txt

The first two files are tables of gene and aberration synonyms. The
aberrations/aberrations-synonyms.txt is a new file and we are aware that
it is less than perfect (see flybase/docs/synonyms.doc).

transposons.txt is a table of Drosophila transposons and vectors.

function.txt is a sort of FlyBase gene symbols by gene function.

external-databases.txt is a file aimed at administrators of other
genetic or genomic databases who wish to update their links
to genes, alleles and aberrations in FlyBase
(see flybase/docs/external-databases.doc).


In addition a newly formatted version of
flybase/docs/controlled-vocabularies.txt has been released. This
version attempts a hierarchical structure of the data, indicated by
different levels of indentation. This can be converted into a
'pretty' file lacking the FlyBase line names by the following
algorithm.

For every line that does not begin with the ! character delete
all of the non space characters until, but not including, the
first space character; then deleted exactly seven (7) space characters.

This will give a hierarchy with zero identation for the top level.





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