[Drosophila] SNP mapping software

Richard Smith via dros%40net.bio.net (by richard from flymine.org)
Tue Nov 8 06:01:12 EST 2011

Hi Kim,
This reply may be too late to be useful, but you can do this in FlyMine:


There is a new region search feature, click the 'Regions' tab at the
top.  Here you can paste in or upload a file of chromosome locations and
search for other feature types that overlap or are nearby.

Once you've run your search you can save a list of the features found,
export, view GBrowse, etc.

You can do the same for human data at http://www.metabolicmine.org.


On 27/10/2011 02:27, Kim van der Linde wrote:
> Hi,
> I have a long list of SNP's in the form of chromosome locations obtained
> from a large GWAS. I can now check all those locations by hand, but I
> would like to do that automated. I checked the internet to see if there
> is some software out there, but I could not find it (maybe I did not
> look at the right location?). Anyway, can anybody suggest me some
> software to make my life easier?
> Thanks,
> Kim

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