[Drosophila] SNP mapping software

Kim van der Linde via dros%40net.bio.net (by kim from kimvdlinde.com)
Tue Nov 8 08:44:45 EST 2011


Hi Richard,

This was the first useful response!

Thank you!

Kim

On 11/8/2011 6:01 AM, Richard Smith wrote:
> Hi Kim,
> This reply may be too late to be useful, but you can do this in FlyMine:
>
> http://www.flymine.org/
>
> There is a new region search feature, click the 'Regions' tab at the
> top. Here you can paste in or upload a file of chromosome locations and
> search for other feature types that overlap or are nearby.
>
> Once you've run your search you can save a list of the features found,
> export, view GBrowse, etc.
>
> You can do the same for human data at http://www.metabolicmine.org.
>
>
> Regards,
> Richard.
>
>
>
> On 27/10/2011 02:27, Kim van der Linde wrote:
>> Hi,
>>
>> I have a long list of SNP's in the form of chromosome locations obtained
>> from a large GWAS. I can now check all those locations by hand, but I
>> would like to do that automated. I checked the internet to see if there
>> is some software out there, but I could not find it (maybe I did not
>> look at the right location?). Anyway, can anybody suggest me some
>> software to make my life easier?
>>
>> Thanks,
>>
>> Kim
>>
>>
>
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