Nucleic Acid Profile Database
stormo at beagle.Colorado.EDU
Fri Jan 7 18:46:06 EST 1994
mhollowa at epo.som.sunysb.edu writes:
>In article <2gjsieINNmrd at emory.mathcs.emory.edu> sammons at bimcore.emory.edu writes:
>>I was wondering if anyone knew if a DNA profile database existed (similar to Prosite)
>>of commonly found functional sequence consensuses?
>There's TFD out of NIH, now up to version 7.
>Ghosh, D. (1990) Nucleic Acids Research 18: 1749-1756.
>Ghosh, D. (1991) Trends in Biochemical Sciences 16: 455-457.
>Ghosh, D. (1992) Nucleic Acids Research 20S: 2091-2093.
>Can be accessed through the NIH gopher or downloaded from NCBI. Some programs that can use the sites file of the database include some GCG
>search programs and a nice MSDOS public domain program called Signal Scan, now up to version 3.
>Prestridge, D.S. (1991) SIGNAL SCAN: A computer program that scans DNA
>sequences for eukaryotic transcriptional elements. CABIOS 7, 203-206.
> The author welcomes comments and suggestions on the program or additions
>to the database. Please contact and send registration to:
> Dr. Dan S. Prestridge tele:(303) 465-0658
> Dept. of Mol., Cell., and Devl. Biology email:DANP at BEAGLE.COLORADO.EDU
> University of Colorado
> Boulder, Colorado 80309-0347
>mhollowa at epo.som.sunysb.edu
I just want to point out that Dan Prestridge now has a new address:
Dan S. Prestridge, Ph.D. E-mail: DANP at MOLBIO.UMN.EDU
Director Telephone: (612) 625-3744
Molecular Biology Computing Center (MBCC) Fax: (612) 625-5780
Department of Biochemistry
University of Minnesota
1479 Gortner Ave.
St. Paul, MN 55108
Gary Stormo |"The society which scorns excellence in plumbing as a humble
MCD Biology |activity and tolerates shoddiness in philosophy because it
Univ. of Colorado |is an exalted activity ... neither its pipes nor its
Boulder, CO 80309 |theories will hold water."
More information about the Embl-db