trembl and EMBL 45

Peter Stoehr stoehr at ebi.ac.uk
Sun Dec 31 08:41:20 EST 1995


In article <4btvtm$9qk at lovelace.infobiogen.fr>, Jean-Marc Plaza <plaza at infobiogen.fr> writes:
> Sorry, I forgot the subjecty so I post it again:
> 
> 
> Hi,
> there are several problems with EMBL 45 when you
> run trembl (Thure Etzold) on it.
> First, in CDS complement , trembl does a core dump when it finds :
>         "complememt(>" instead of "complememt("
> Secondly, The codon start for HSACTSG7 is /codon_start!29 in EMBL 45
> instead of 1, 2 or 3. And trembl does not like it -core dump. :-)
> In Genbank the codon start is /codon_start=1 for HUMACTSG7 and
> the translated sequence is different.

Jean-Marc,
We have corrected the /codon_start value in the EMBL entry, from 2129 to 1.
I realise that doesn't immediately help with trembling EMBL 45...

Regards,
Peter Stoehr
EMBL - EBI



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