sequence alignment

Jeroen Coppieters jecop at ebi.ac.uk
Thu Jan 12 08:12:06 EST 1995


Xiao-Ru.Wang (Xiao-Ru.Wang at genfys.slu.se) wrote:
: Hi,

: Can anyone recommend me a multi-sequence alignment program?
: I have a group of DNA sequences with known EMBL/GenBank ID # and
: would like to align them and compare the sequence differences.  Is there 
: any accessible net-program exist that can retrieve the specified sequences
: with accession # from database and then make the alignment? 
: BLAST does not suite my problem since I do not have query sequence.
: Any help would be greatly appreciated. Thank you for your time!

: X-R. Wang
This is not an available net program, another solution.
You can get clustalv from ftp.ebi.ac.uk
directory /pub/software/(dos or unix or mac or vax)
The sequences can be retreived from the same site:
the easiest way is to use SRS via WWW
URL: http:/www.ebi.ac.uk/srs/srsc
alternative you can use the email server: send mail to 
netserv at ebi.ac.uk
(give HELP in the mail-body to get a description of how it works)

Jeroen
--
======================================================================

         . O .                               Jeroen Coppieters
     . O O o   O .                            Software Support
   O O O O *o    O O               Jeroen.Coppieters at ebi.ac.uk
  O O O O(   *o  )O O                         ++44 1223 494422
  )O O O O   o*  O O(                        
  O O O O( o*    )O O
  )O O O O  *o   O O(                      EMBL Outstation EBI
  O O O O(   *o  )O O      (European Bioinformatics Institute)
  )O @ O O   o*  O O(                             Hinxton Hall
    O O O( o*   )O('                                   Hinxton
     ` O(   *o O  '                         Cambridge CB10 1RQ
         ` O '                                              UK
http://www.ebi.ac.uk
======================================================================



More information about the Embl-db mailing list