Urgent: database search with aminoacid sequences

Christian Götting christian.goetting at gast.genetik.uni-bielefeld.de
Thu Aug 12 02:04:21 EST 1999


How can I search for matches within the EMBL databases (nr and est) with
a combination of aminoacid sequences ?
I do have the aminoacid sequences of 3 peptides (too short for a search
on its own) and want to do a combined search. Can anyone tell me what
parameters I have to use with tblastn (or any other program) in order to
combine the peptides.
The main problem is how to mark the gap of unknown length between the
peptides.

Thank you very much for a early reply (its URGENT)
Please post it here and send it to me via email (biomedpage at gmx.de)

Chris




More information about the Embl-db mailing list