Large Scale Linkage

[Sourav Bandyopadhyay]

I was wondering if there is anything that will automatically split and break
loops if needed for large pedigrees around 100 bits in size. Is there
anything that will split the pedigrees into something manageable and then
put the output back together again for multipoint analysis?
We are stumped because everything is max at ~30 bits or does not allow our
complex pedigrees.
any help would be great. thanks.
-Sourav