CDS sequences needed

pedrobeltrao pedrobeltrao at mail.pt
Fri May 10 16:08:06 EST 2002


"Huaichun Wang" <hcwang at science.uottawa.ca> wrote in message
news:abgrk1$emt$1 at mercury.hgmp.mrc.ac.uk...
> I have a list of 5126 protein sequences with SwissProt ID or accession
> number that I want to get the corresponding coding sequences from
> Genbank, EMBL or other databases.
>(...) Is there a way to do this extraction of gene (CDS)
> sequence according to swissprot IDs automatically?
> Huaichun Wang

Hi,

I guess the easiest way I see is to use PERL with BioPerl to go trough the
list and retrieve it. It takes a bit of time to set everything up and a bit
of practice with PERL but it makes tasks like that very simple.





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