RAT draft genome annotations fgenesh++

Victor Solovyev victor at softberry.com
Fri Jan 10 20:47:05 EST 2003


==== RAT draft genome annotations fgenesh++

We're pleased to announce the release of fgenesh++
gene annotation on
the Nov. 2002 rat assembly produced by the Baylor
 College of Medicine
  Rat Genome Sequencing Center and the Rat Genome
 Sequencing Consortium.
 
 You can see/get gene annoation at UCSC Genome
 Browser on Rat Nov. 2002 Freeze
 
 
   http://genome.ucsc.edu/cgi-bin/hgGateway?org=Rat
 
 or alternatively in GenomeExplorer: 
 http://www.softberry.com/berry.phtml?topic=ratexp
 
 Fgenesh++  annotated:
 
  43008 genes includes 28955 genes supported by NR
 proteins, among them 3763
 genes correponding RAT refseq mRNA
 
 
 ID and Name of similar protein added after ## in
 name line of fasta files 
 *.pro
 Refseq corresponding proteins additionally marked
 NM_..
 
 Fgenesh++ predictions are based on complex fully
 automatic script that mapped
 known Refseq RNA, predict genes and refine predicted
 genes that have protein 
 support from other organisms.
 
 Reference:
 Solovyev V.V. (2001) Statistical approaches in
 Eukaryotic gene prediction.
  In Handbook of Statistical genetics (eds. Balding
 D. et al.),
  John Wiley & Sons, Ltd., p. 83-127.)
 
- 

=====



Moderated
bionet.genome.gene-structure



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