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46 newly mapped SSR's

Mary Polacco maryp at teosinte.agron.missouri.edu
Thu Nov 11 17:03:48 EST 1999


Dear Colleagues,
Below is a list of 46 newly mapped SSR's that have been developed by the
Misssouri Maize Project and added to the community summary page at MaizeDB:
    http://www.agron.missouri.edu/ssr.html

Individual SSR records at MaizeDB are linked, where appropriate
to the Oct. 25 'contig' information for the Stanford Project EST's.

-mary p.
curator MaizeDB


    Columns:	Name
		Bins
		GenBank accession
		PrimerF
		PrimerR

  umc1256      1.00- 1.01           AI987546 
CATCTCGACCTTTGACATTCTCCT        AGAAGACGATGATGATGATGCAGA
  umc1282      1.00- 1.02           AI973474 
TACACTACACGACTCCCAACAGGA        GCGAGGGTTCTTTCCATAGAGAAT
  umc1292      1.00- 1.02           AI948373 
GAAGTGGGGAACATGGTTAATGTC        TCACGGTTCAGACAGATACAGCTC
  umc1144      1.04- 1.05           AI629804 
ATGGCCCACTCATCATATCTCTGT        TGTGTTGATTAGCAGCGGATAAAA
  umc1244      1.05- 1.06 
AACCTCAGCTAAAACTGCTCGTGT        TTGTGCGTGTTTGGAAGTGATAGT
  umc1281      1.05- 1.06           AI977991 
TCAGAATGAGAACATATGGTGGATG       GTCTGTGTCGACCATTTTGACTTG
  umc1245      1.07- 1.08           AW011644 
TGGTTATGTGCATGATTTTTCCTG        CATGCGTCTGATCTTCAGAATGTT
  umc1278      1.07- 1.08           AI964577 
GTCGGAGGATGATCCCCTATCTAT        TGCCATAGTACATGTCCGTCATTC
  umc1290      1.08- 1.11           AI977820 
CTGCTCACGCTCATCCTCCT            AGAGATTCATCAGAGTGGCGATG
  umc1265      2.02- 2.03           AI977889 
GCCTAGTCGCCTACCCTACCAAT         TGTGTTCTTGATTGGGTGAGACAT
  umc1261      2.03                 AI987278 
AGAAGTGCGTATGCTACAGTGGTG        CCTAGTGGTGGAGTTCTAGGCAAA
  umc1262      2.03                 AI987278 
GTGAAGCTCTGCACCACGCT            ATCGTCCAAAGAAGAAGAGGGAGA
  umc1259      2.04                 AI987342 
CTCTTTGGTGGCAGAAGCAGAAT         TAGCTAAACTTGAGTGCTCTGCCC
  umc1156      2.06- 2.08           AI600776 
GCTGTGACGTTTGCTACTACTCCA        TAGCTATGCCTATGGCCCTGATAA
  umc1126      2.08- 2.09           AI677556 
CAACAGGGTGAACCCTCTGTACTT        AATATGGTGTTGTGATTTGCATCG
  umc1266      3.06                 AI977803 
CACAGGTAAAAGTAAACGCACACG        CTCGTCATTTTCAACGTCCTCTTT
  umc1286      3.06- 3.08           AI987404 
ACCGGACCGGATCTTTATCTTTTA        GAGGTTATTTCTCCGCAACTCGAT
  umc1232      4.00- 4.01           AW018157 
GGAATTACCACAACAAACTAAACTTGG     AGGCTCTAGCTACCTGGCTACGTT
  umc1276      4.01- 4.02           AI966861 
ACGCAATTATTACTGCCACACGTC        CTACCTTGTTCCTAGGGCCGTCTA
  umc1284      4.09- 4.10           AI941906 
TTCCTCTTTTTAGTAGGGGGTTGG        AAGATGATGGTGGAGAGGATGAAG
  umc1240      5.00- 5.01           AW017539 
GCAGCAGGTATTGGAAGTCGTAGT        CTGGTCCCTCAGGAAATCCAT
  umc1274      5.02- 5.04           AI987395 
TTGAGTCTGGTACTGCGTATGAGG        TAGCACTCCAACAGCAAGAGTTTG
  umc1162      5.04                 AI586426 
CATCAGCAGGAGGAGCAGTCTC          CCTGTTGACGAGAAGAAAGAGGAA
  umc1283      5.04                 AI942127 
CTGCTCCCTTATGATGTGATGATG        TGCACTGAGGTGTAGGTAGAGCAA
  umc1171      5.04- 5.08           AF050129 
ACGTACTACAGATAATGGGCGACG        CGCCGTACCCATGAGTATAATGTAA
  umc1264      5.05- 5.06           AI977895 
AGATAGCTGCACATGGAAACACTT        GACACTAGCCTGGAATCAGTTTCA
  umc1257      6.01- 6.04           AI987369 
CAACGGAAGTGGCTGTAGAGTTTT        ACAGAGCATGTCAGGTATTTGCAG
  umc1250      6.05                 AW000421 
GAGGCAAGAGCTAGGTCTCGATAG        CTGCTGCTTTTGGTGTTGTCTCT
  umc1248      6.07- 6.08           AW000535 
CTTTGTCCATCGGCTTTATTCTTT        CACATTAAGTTACAAATACAAATCACCG
  umc1251      7.03- 7.04           AW000337 
GGTAGTGCTTGGTATTGACATCAGA       CTCTTGAAGATGGTCCTAGCATTG
  umc1275      7.03- 7.05           AI978123 
GTTCGCAGGCCTAGACTCTAATGA        AGTTCTAGTCCCTGGTGATCCTCC
  umc1125      7.04- 7.06           AI677562 
CGTCCGACATCTTGCTTTTCTATC        TTTTACTTCTCAGCGGTAGATCGG
  umc1236      8.02- 8.04           AW017823 
ACAATCCATGGAGGTCACAAGTTT        CGCGCTGGAGTATAGCATAGAAGT
  umc1289      8.02- 8.04           AI979643 
AGTTATCCATCATCTTGCGGGTTA        ACGCTTGGCTCTCTAGTGGCTTAT
  umc1263      8.05                 AI979687 
AATCTCATCGCCACTAAGGTTCAG        TGATCTTTCTGTTTCTCTCCCCTG
  umc1268      8.07- 8.08           AI973516 
ACGAACAACCTAGCACAGTCCTAAA       CAAGGCGGTTACCAAGTTTACATC
  umc1267      9.01- 9.05           AI974888 
TTACAACACGCATGCATCTAGCTT        AACAACAAAGAACTCACCAGCCTC
  umc1258      9.02- 9.05           AI987351 
TGGGGGTTATTATGTAAACCAACG        GAAGACGATGAGGAGTGGGAGTT
  umc1120      9.03- 9.04           AI691610 
GCACAGCTTTGTCCCTCGAA            GACCCTCGAGCTTCTCTCATCTTT
  umc1107      9.03- 9.05           AI714724 
TGAAAACTCTTTGCATTTTTGCTG        GAGATTTGGGAGTGAAATTGGTTG
  umc1277      9.07- 9.08           AI966933 
TTTGAGAACGGAAGCAAGTACTCC        ACCAACCAACCACTCCCTTTTTAG
  umc1291     10.01-10.02           AI964426 
CAAGTCGTGATCATGCGTAGGTAG        ACTGCTCCAGGGTGAACTGAAC
  umc1239     10.03                 AW017656 
ATCAACACACCTTTCGATTTCTGG        CGGTGATTAGTCGATGAAGAGTGA
  umc1246     10.03-10.04           AW000581 
TCGAGTTTGCTTCTCTCCAGTTTC        TGCAGCATATGGCTCTTTATTCAA
  umc1280     10.04-10.05           AI979671 
AAAATCCATGGCTTCTTTCTTTCC        AACAGCCAGTTTTGGGCTGTATAA
  umc1249     10.04-10.07           AW000458 
GACCAGCAGCACTAGAGGACATTT        CTTCTGTTACTTTGGCAGCGGTT
*** END OF QUERY RESULTS  ***




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