SSR map updates

Mary Polacco maryp at teosinte.agron.missouri.edu
Tue Oct 5 12:58:45 EST 1999


Dear Colleagues,

Over 110 new map locations have been assigned since July by the
Missouri Maize Project to SSR's identified  at Missouri (MD McMullen;
umc designated) or by the Maize Microsatellite Consortium (KE Edwards;
mmc designated).  The list is below.

More details may be found on the SSR page, 
http://www.agron.missouri.edu/ssr.html,
at the MaizeDB site.

Best regards,
mary polacco

Colummns:
	SSR
	Bin (or Bin Range)
	GenBank Accession
	Primers
            forward and reverse

  umc1106      1.00                 AI714829 
CATCCAGTCATCGGTAATACGACA        AACTGTTGCCTTCTTTTTCCCTTC
  umc1041      1.00- 1.01           G44698 
CATTTCTTAGCACAACGCTGGTAAC       GCCACTGTGATTTCCCTTGTGT
  umc1177      1.00- 1.01           AI001344 
CGTGTACCGCTCCTCTATAGTCGT        AAGTGGCCGAATTCATCCTTTATT
  umc1071      1.01                 AI396561 
AGGAAGACACGAGAGACACCGTAG        GTGGTTGTCGAGTTCGTCGTATT
  umc1160      1.01- 1.02           AI586523 
CGTTTGATATGATGTGGAGATTCG        AAGCTTGTGAATGTTCTGGATGTC
  umc1070      1.02                 AF039585 
GGTCTCTCTATCGTCCGGTGAGTA        CCGGAGATGGGAAAGAAGATAAC
  umc1166      1.02                 AI438624 
CGATCAGATCATACACAACCTTGC        GAGGATCGATTCTTGGCGAGT
  umc1021      1.03                 D84409 
AGCCTCCTGAGACCTCTCGATT          ACTTCGCCACCTTACATTCTTGA
  umc1169      1.03- 1.06           AI396370 
TAGCCAACAGTCCAACATTTTTCA        CAGGCTAGAATAACATCCCGAAGA
  umc1035      1.06                 G44396 
CTGGCATGATCACGCTATGTATG         TAACATCAGCAGGTTTGCTCATTC
  umc1123      1.06                 AI691197 
ATTGAATTCGCAACAGAATCGTG         CGAGAACAATTACACGTTACACGC
  umc1122      1.06- 1.07           AI691437 
CACAACTCCATCAGAGGACAGAGA        CTGCTACGACATACGCAAGGC
  umc1147      1.07                 AI491675 
GAGAAACCATCGACCCTTCCTAAC        TTCCTATGGTACAGTTCTCCCTCG
  umc1128      1.07- 1.08           AI677212 
TCAATTTTGAGCTATCACTTTCCG        ATTGGTTCCATTGGTTTTGTTGAT
  umc1184      1.09- 1.11           U13702 
CTTCCTTACGTGTCACCGCTCT          GTGGAGTGATGTGATCGATGATG
  umc1064      1.11                 AB001387 
GTGGGTTTTGTCTGTAGGGTGGTA        TCCATCCACTCGACTTAAGAGTCC
  umc1111      1.11                 AI714551 
GGCAGCTGGTACTGGTAGAGTCC         CCTGTACGAGCCAGCTCTGATG
  umc1118      1.11                 AI691735 
ATCAGATTCCGAAGGGTCCATAAT        GTAGTGAAATGAATCGTGAGAGCG
  umc1129      1.11                 AI673868 
GGATGACCGATATAAAGACCTCCC        GAGGATGCAAAGAACATGTTGGA
  umc1165      2.01- 2.02           AI491254 
TATCTTCAGACCCAAACATCGTCC        GTCGATTGATTTCCCGATGTTAAA
  umc1185      2.03- 2.04           U13701 
AGTAAAAGAGGCAAGGACTACGGC        GCGGCGATATATACGAGGTTGT
  umc1024      2.04                 G42326 
CCTTTTTCGCCTCGCTTTTTAT          TCGTCGTCTCCAATCATACGTG
  mmc0401      2.05 
CTCAGCTGCACTCCACA               CCTTCCTTCTTCTCCAGC
  umc1004      2.05                 G42328 
CTGGGCATACAAAGCTCACA            TGCATAAACCGTTTCCACAA
  umc1065      2.05                 U82230 
ACAAGGCCATCATGAAGAGCAGTA        CACGGTCTGGCACACTAACCTTAT
  umc1079      2.05                 G44735 
AGCACACATGCACAACATCTTACA        CGTTGGGCCATGACTTTCTTTA
  umc1080      2.05                 G44737 
GAGGAGAAAAGGAGATGGAAAAGC        AGATGCCGCAGAAGATTCTAAACA
  umc1108      2.06- 2.09           AI714672 
TAAAGAGAGAGGAAACAAGCTGCG        ATGATGAAGCCTCACACATACGAA
  umc1049      2.07- 2.08           AI391788 
GCAGGAAGTTGCAGTTGTTGTTTT        GTTTCCCGCTTTGTAAAATCCTGT
  mmc0381      2.08- 2.10 
GTGGCCCTGTTGATGAG               CGACGAGTACCAGGCAT
  umc1057      3.01                 Y18377 
GCCACGCTCAACTACGACAAC           GAACCCCTCCACGTAGCTCAG
  umc1102      3.04- 3.05           AI714980 
AAAATTAAAGTCAAGAGCGGGGAG        TCTAGCCGTAGCTTTAGCTGCATT
  umc1158      3.04- 3.05           AJ223471 
AATGCAACTGCTTCAGCTCCTACT        CGACGAATCGAGAAAAGATATTTGA
  umc1167      3.04- 3.05           AI461518 
CCTGCATGCATTAGGTATACGAAG        GTTTCTTCCAAGTTTTTGGCTTGA
  umc1174      3.04- 3.05           AI065741 
GCTAGTAGCTCTAGTTGTCCGCGA        GCTCAAGGTTGTTTTCTGCCAGT
  umc1027      3.06                 G42325 
AACTCTGTCTCCGTCACCGTGT          GACCTCATCTCGGTGGAAATTG
  umc1135      3.07                 AI666158 
TTTTTAACCTCACGAGCATCGTCT        CGCTAGCTTAGCTCCATCGTTTTA
  umc1148      3.07                 AI619288 
AAAATTACAGAGCATTTTGAAAGAAGAA    TAGCCGTGTCAGTTTGTAGATCCT
  umc1140      3.08                 AI657278 
CGAGCAAAGAGAGGGAGAGAGA          GCCTCTACCACCTCGTCCATC
  umc1136      3.10                 AI665966 
CTCTCGTCTCATCACCTTTCCCT         CTGCATACAGACATCCAACCAAAG
  umc1088      4.04                 G44744 
TCATCCTCCTAGCTCCTCTACTCG        AAAACAGTCAGCAGAACCCACTTT
  umc1173      4.04                 AF035815 
ATCCGCCAAAAAGGGGAAAA            TAGAAGTAGCACACGCGCCG
  mmc0471      4.04- 4.05 
TTAGCACATTTGAAGAGTTTTG          TTTCCTTCACGTTTCTCTGT
  umc1117      4.04- 4.05           AI691779 
AATTCTAGTCCTGGGTCGGAACTC        CGTGGCCGTGGAGTCTACTACT
  umc1175      4.04- 4.05           AI065709 
ACACCCCAAAACTCACTTAATCCA        CCCTCGTAGTCTGTCAAGGTTTTG
  umc1142      4.05                 AI649544 
CCGAAAACCCATTCTTCTAGCATC        GTGCGGTGTTCTCTCTTTCACTCT
  mmc0371      4.05- 4.07 
CCACGCACCTCTTGTAAC              GGGAACCTACAGCTTGGT
  mmc0341      4.06- 4.11 
CTGACGATTCATGTGGCT              TCCTAGTACACCGCAACTCT
  umc1043      4.07- 4.08           G44699 
CTGCGCATGAGAAAACAGTGG           TCCATCTCTGGCTGGAGGTTAAT
  umc1058      4.07- 4.08           U58209 
AGCAAGCAGTTCGAAACAAGGAT         GACACCAGCACCACTTGAACG
  umc1051      4.08- 4.09           AI372215 
CTGATCTGACTAAGGCCATCAAAC        AATGATCGAAATGCCATTATTTGT
  umc1132      4.08- 4.09           AI667779 
CCAGTCCTCATTACGTTCCGAAT         GGAGAGGGACAGAGATAGGGAGAG
  umc1101      4.09                 AI715011 
GCTGAAAAACGGAGTTCATATGGT        AAGCTTATCCACCTCGAGGAAAAC
  umc1109      4.10                 AI714656 
GCAACACAGGACCAAATCATCTCT        GTTCGGTCCGTAGAAGAACTCTCA
  umc1163      5.00- 5.01           AF105716 
AACTAGAGGACACGCAGACTTGCT        GTTCTGCAGGGAAGAAGCAGC
  umc1151      5.02- 5.07           AI612267 
GATCCATAGCGCTAGTGCACTCTT        ACTGCCGGGTGGCTAATGAT
  mmc0351      5.03 
GCAGTGCATGTATCTGATCTAC          AGGCTCTCTTGATCCTTCA
  umc1048      5.03                 AI391947 
TGCGCTGTTTCCTACTCAGACTAA        AAGACAAGTCCAGTGACGAAGAGC
  umc1060      5.04                 AI065782 
ACAGGATTTGAGCTTCTGGACATT        GGCCTCTCCTTCATCCTATTCAA
  mmc0282      5.05 
CTCTTTCTTTATTTGTTCCGTT          GGACTACACATCACCAGCA
  umc1155      5.05- 5.06           AI600986 
TCTTTTATTGTGCCCGTTGAGATT        CCTGAGGGTGATTTGTCTGTCTCT
  mmc0481      5.06 
GCACCTGCGAGACTAGG               TGTTTGAGCCGTTCTAGACT
  umc1072      5.07- 5.08           AI396502 
GAGGAGACCGCCTCTGGTTC            CTTCGGGTTCCTGGACCTTCT
  umc1153      5.09                 AI612208 
CAGCATCTATAGCTTGCTTGCATT        TGGGTTTTGTTTGTTTGTTTGTTG
  umc1143      6.00- 6.01           AI637041 
GACACTAGCAATGTTCAAAACCCC        CGTGGTGGGATGCTATCCTTT
  umc1178      6.01- 6.02           AF019146 
CTGTCGTAAGAGCGCCAACAG           GTCTGAACGATGAACAGTACACGC
  umc1133      6.01- 6.03           AI666201 
ATTCGATCTAGGGTTTGGGTTCAG        GATGCAGTAGCATGCTGGATGTAG
  umc1006      6.03                 G42321 
AATCGCTTACTTGTAACCCACTTG        AGTTTCCGAGCTGCTTTCTCT
  umc1083      6.03                 G44740 
CTTTCCTCTCTGGAGCGTGTATTG        ATATGTTGCAGAACCATCCAGGTC
  mmc0523      6.04 
CCCTCTCTTCACCCCTT               AGACCCTGCTGCTAGCTAG
  umc1105      6.04                 AI714896 
ATTCCTGCATCATCATCCACTACA        GCCAACTGATCTGCTCTAGCTTC
  mmc0241      6.05 
TATATCCGTGCATTTACGTTT           CATCGCTTGTCTGTCGA
  umc1087      6.05                 G44743 
AATCGTTTACACGAGAAGCAAAGC        ATTTCTAACTGGTCGCGCTGTTT
  umc1114      6.05                 AI692068 
CAATGTGTTATTGATTGTACACCGC       ACAGCAGGAGGCAGAGACTGAC
  umc1187      6.05                 L18924 
AGAGCTACCACCCCTCTTATCCC         ATGTGCATGCTCTTGTTCCTATCA
  umc1063      6.07                 Z29512 
AGGCCACTGAGCAGGTGAAG            GTGATGGTAGAGGAGTCCTTGGTG
  mmc0411      7.02- 7.03 
CGATGCAAGAGTGTCAAGTA            ACTCCCTAGTGCAAAAATCA
  umc1112      7.03                 AI711634 
TTGGGTTCAGTTTTCACAACCTTT        AAGATGATTACTAACTCGCGGCAG
  umc1134      7.03                 AI666177 
AAAACTAACAGGCAGCAGACCAAC        ATCAGCAAGTGACTGAATTCCTCC
  umc1103      7.04                 AI714939 
TGGAGAGAGCTCAACTGGTAGCTT        AATTTTCAGGGTGTTACGTGGATG
  umc1154      7.05                 AI603762 
CCACCACAAGACAAGACAAGAATG        CCTGATCGATCTCATCGTCGT
  umc1075      8.01                 AI396125 
GAGAGATGACAGACACATCCTTGG        ACATTTATGATACCGGGAGTTGGA
  umc1139      8.01                 AI665279 
TTTGTAATATGGCGCTCGAAAACT        GAAGACGCCTCCAAGATGGATAC
  umc1157      8.02                 AI600685 
AACTCGCTATCGAAAAACCACAAG        TCGGATTTTAGCTGAGCTTGTACC
  umc1172      8.04                 X59546 
CTCCTCCATCCAACACTGAACC          ATGAAGCAGAGGCAGTCTTTCTTG
  umc1130      8.04- 8.05           AI670662 
TTGGGACTCATTACTTCCGGACT         GCTAGGGGAAAGCTCGTACTATGG
  umc1121      8.05- 8.06           AI691589 
AAAACGACATGTCATCGTCTTCAA        GGGGTCAGGTACAGGGCTAGTAGT
  umc1149      8.05- 8.06           AI619232 
TACAGTAGGGATTCTTGCAGCCTC        GTGGGACCTTGTTGCTTCCTTT
  umc1055      8.07                 AF101430 
CTCCAACTTGCACTCTCCAGTCTC        TTCTGCCAGCTGCAATAATCTTCT
  umc1005      8.08- 8.09           G42329 
TTTGATCACAGACTTATCCCTGTT        CTAATGACGAACCCCTAAAAGGT
  umc1069      8.09                 M16900 
AGAGAATCCCCAAGCAAACAAAC         CTTCATCGGAGCCATGGTGT
  umc1040      9.01                 G44697 
CATTCACTCTCTTGCCAACTTGA         AGTAAGAGTGGGATATTCTGGGAGTT
  umc1033      9.02                 G44394 
CTTCTTCGTAAAGGCATTTTGTGC        GTGCGGGATTCCTTAGTTTGC
  umc1037      9.02                 G44398 
GTGCGCGATTCCTTAGTTTGC           CTTCTTCGTAAAGGCATTTTGTGC
  umc1078      9.02                 G44734 
AGGCACTAGCAGGCGAGAGG            GCGTAGTAACATCCATCCAACCAA
  umc1131      9.02                 AI668245 
CCTACAAATCAACCATCGATTTCC        GTGCCATCAAAGAGGAATTGGTAG
  umc1170      9.02                 AI649893 
TGGGTGCTAAAACGTAACAACAAA        GAGGACGAAGCAGAAATCCTACC
  mmc0051      9.03- 9.04 
ACGACTCTATCCCTGCCAACT           TCTGGTTGTGAAAGCTATCCT
  umc1137      9.06- 9.07           AI665873 
ATCAGTCACTCTTCTGCCTCCACT        GGCTGGATAATGTTGTAGCTGGTC
  umc1104      9.07- 9.08           AI714928 
CAACAATTCCAATCATGGCACTAA        GTAACTCTGGTGAACTCAGAGGGC
  umc1045     10.00 
GCTCGTCCATGAGCAGCATC            AAGCTGAAGATGCGGAGGTTG
  umc1152     10.01                 AI612250 
CCGAAGATAACCAAACAATAATAGTAGG    ACTGTACGCCTCCCCTTCTC
  mmc0501     10.02 
TGCTGAACACTCTAAGCAATAC          ATTACTCTACTCGCTGCCTG
  umc1179     10.03- 4.11           T23346 
AGCTCCCCATCTTAATCCGTAAA         ATTGAGCTCGGCGTAGAAAAA
  umc1009     10.03-10.04           AF048900 
AGCAGCTCTGGTGATGGAAGAA          ATCCTAACAGGCGCATACCAGA
  umc1047     10.03-10.04 
AGGAAAGAAGGTAACCCATGCACT        GGCGAGTTAGAGGAGTCAGACACA
  umc1053     10.03-10.04           AF043346 
CTTGTATCATCAGCTAGGGCATGT        TCAACTTATGTCAACTGCATGCTT
  umc1077     10.03-10.04           G44733 
CAGCCACAGTGAGGCACATC            CAGAGACTCTCCATTATCCCTCCA
  umc1097     10.05                 G48148 
CTCGTCAACGTCAACCCAAGTAAG        CTGTTAGATGTGCGACAACAGAGC
  umc1061     10.06                 AF057183 
AGCAGGAGTACCCATGAAAGTCC         TATCACAGCACGAAGCGATAGATG
  umc1176     10.06-10.07           AI065566 
ATGAGTTCATGACAGAGCGCTACC        GAGTTTGTTCGTTTGTGTGTGGAG
  umc1084     10.07                 G44736 
GATAAAAAGGCAAGTGCAACAAGG        ATATCAACCAGAGGCTGGAACTTG
*** END OF QUERY RESULTS  ***



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