SSR release

Mary Polacco maryp at teosinte.agron.missouri.edu
Fri Jul 14 18:10:41 EST 2000


SSR release notes:

The Missouri Maize Project has released 47 new SSR markers,
and updated bin locations
of 55 others less precisely mapped in earlier releases.
They have been incorporated
into the MaizeDB and are accessible from the SSR page:
      http://www.agron.missouri/ssr.html

Two tables below have just the new OR the updated data.
GenBank entries are being prepared for the
new SSR markers where no accession is listed below.
Where screening images are absent these
are being prepared for linking to the SSR page.

Have a great weekend,

-mary polacco
curator MaizeDB


NEW SRR MARKERS

    SSR         Bins                  GenBank               PrimerF 
PrimerR
  ----------  --------------------  -------------------- 
------------------------------  ------------------------------
  umc1676      1.03- 1.06 
AGTCGTACGATGACGGAGGC            GCACCACCGACTGATCAAGA
  umc1664      1.06 
AATTGTTTACTGCGCTGAAACTCC        CCTCTTTGCCTGTACCGTGTATTC
  umc1668      1.06- 1.07 
AGCAAATAAAAGTAGAGCGGCGAG        ACCACCACCACTGCCTCCTC
  umc1661      1.06- 1.09 
ACGAGACTCCCTCCTCTCCTCTC         GGAGTAAACTGTTGAAAGGCCCAT
  umc1681      1.11 
GAGGACACTCGCAAAGTCGC            GCCTTTGTGGGGTCAGGAGTAG
  umc1630      1.11- 1.12 
CAGACCTTCGAGGGCAAGAACT          AGTTTTGGCTTCTTCTCCCAAGTC
  umc1635      2.05- 2.06 
GCTGAGCAGATCTTTCCTTGTTTC        AAGGAGCAGAACTCGGAGACG
  umc1658      2.06- 2.07 
AGAGATGGGGTAGAAATAGACGGC        CTCTCTGCTTTCTCTTCTCTTGCG
  umc1633      2.08 
GTCCTTCCTCTCCTTCGTGCATA         CAGAGGCTGTTGTTCCCCAC
  umc1637      2.08- 2.09 
GTTCCAGTTCAGCTTCCAGCA           CTGTCGTGTACAGCATCACTTCTG
  umc1674      3.06- 3.07 
ACGAGGTCCACGACTATGGATCTT        AGTAGTACACGGCTGACGGCAC
  umc1644      3.06- 3.08 
CCATAAACTGTTCCTTTGGCACAC        CTTTCACGTGTTAAGGGAGACACC
  umc1659      3.07- 3.08 
CAAGCTTGCTACTGTGATTTCTCG        AACTTCTCGGTGATCTTGTCCATC
  umc1641      3.09- 3.10 
CTCCCTTCGTCTCCCGACTC            CAGATCGGCTCAGCCACAAC
  umc1639      3.10 
CTAGCCAGCCCCCATTCTTC            GCAAGGAGTAGGGAGGACGTG
  umc1669      4.01- 4.02 
ACGAGGGCTTCTTCTCTGAGC           GTTTCCTTCTTCATGCGACGAC
  umc1652      4.04- 4.05 
GAGAGCAGTAGCACTGACCCTTTC        CACTCGACCTCGATCGGAAC
  umc1662      4.05- 4.06 
CCTTCTTCCTTCACGCCTCTTT          GACCACCTCATCTCTGACTCTGG
  umc1476      4.07- 4.08           AI770848 
CTCTGCCTCAGTCTGGTCGC            CGAGGAAAGGAAGGAGAGCG
  umc1651      4.07- 4.08 
GATGGTGGTTATGAATGCATGTGT        AGACGACGAAATTAACCAGCCATA
  umc1667      4.07- 4.08 
AAACATACCCCACCACTGCAAG          CGAAGAACATGTAACACAGCAACC
  umc1650      4.08- 4.10 
TCGTGAACTACTACATGGTGAGCA        AAAGTTCGTTCCTCCATGGTACTG
  umc1631      4.09- 4.10 
CATGAATAAAGATGGATGCTGGTG        GGAAAAACAAAGAAGCATAGTAGACAGC
  umc1643      4.09- 4.10 
ATCACCACATCCGTTGCAAAT           CTAGAATCTCGTAGAGGCTCCTGC
  umc1557      5.03                 AW066607 
CTAGTTCTCTCAAAAGCGCCG           ACAATAGGTAGGTCCCCTGCTTT
  umc1629      5.03- 5.05 
GCTCCAAGTtcgtcgtcgtc            CTCACGACCTTCTTCTTGCACAC
  umc1680      5.06                 AW261378 
TTAATAAAGGAGAGGGTGGGAACC        GGGGCTTATATGTCCCTTGAACTC
  umc1646      5.07- 5.08 
GCAATTATGAACAGTTGCGTGTGT        AGTGGATCGATCGAACATGACTTT
  umc1656      6.01- 6.04 
AGTTTTGACCGCGCAAAAGTTA          GTACGAGCAGGCCATTAACCC
  umc1628      6.02- 6.03 
GGCTGTAATGCAGGAGATTGAGTT        ACTCACGTCACAACTACCGTACCA
  umc1653      6.08 
GAGACATGGCAGACTCACTGACA         GCCGCCCACGTACATCTATC
  umc1666      7.02- 7.03 
TTATTGCCCTCCCTGTTCTTGTT         ACCTTGACGCAGCAATCCTC
  umc1660      7.03 
GAGCATCGCAGTGGTGGTTAAG          AGTAGAGGGTGAGCGACTTGGAC
  umc1671      7.05- 7.06 
AGCGGAGGAGAGGGAGGTTAT           AAGTCCAGGTACCTCAGCTTCG
  umc1670      8.05- 8.07 
CCTAGGAATAAGATCGCAGGCTTT        ATTGTCGACTACAGAGAAGACGCC
  umc1665      8.06- 8.07 
CAATCAGGAGCCAGGGAGATG           CTTAAACTTGTCGAGACGGTCCTG
  umc1638      8.08- 8.09 
AGGTGACCTCGACGTCCTACG           GAGGGGAACAAAGACTTGACGTT
  umc1663      8.08- 8.09 
GCTTGCACTAGCTTTAGCTCCATC        CGGGATCAGTCGTTACAAACATAG
  umc1673      8.08- 8.09 
AAGCTCAAGCTCCTAGCTCTTCCT        GAGGAGCGTCTCCAGAAGGAC
  umc1647      9.00 
TAAAGCCACAGGCACGAACTTAAT        CTTCGCATTTGCACCCAAAC
  umc1634      9.02- 9.03 
TCCGTTGAGGACACTCGAATTTAT        GTAGCCTGCAAAACATCCAAGAAC
  umc1636      9.02- 9.03 
CATATCAGTCGTTCGTCCAGCTAa        GTACTGGTACAGGTCGTCGCTCTT
  umc1657      9.03- 9.04 
ATGGATGAATATGATCCCACGG          GATCCGCACGTAGCTTTTCG
  umc1654      9.04- 9.06 
CACATTGATCAACTACCAGGTGGA        GCCTCTTTTCTTCTCCCATTTTCT
  umc1675      9.06- 9.09 
GTTCTTCCTCTTCCCCATCAGTCT        ATAGCTGCGCGTAAAGCAACC
  umc1648     10.03-10.05 
CTGCAGTACGTGAGCCTGTACG          GCTTGAGCTGTGAGGAAGTTTTG
  umc1677     10.03-10.05 
TGCAGCAAGTTTGGCTACTGC           CTCTTGATGCCGTTGAAGAAGG
  umc1678     10.05-10.06 
GTAGAGATCGATTCGCTAACCTGC        AGTTGTTCCGTTCCGTCCTTATC
  umc1640     10.07 
ACTACACGGTGTGAGATGTGATCG        GTCGTCGCAAGAACAACAAGG

PREVIOUSLY MAPPED MARKERS BUT WITH UPDATED BINS

  SSR         Updated_Bins          GenBank               PrimerF 
PrimerR
  ----------  --------------------  -------------------- 
------------------------------  ------------------------------
  umc1177      1.00                 AI001344 
CGTGTACCGCTCCTCTATAGTCGT        AAGTGGCCGAATTCATCCTTTATT
  umc1292      1.00                 AI948373 
GAAGTGGGGAACATGGTTAATGTC        TCACGGTTCAGACAGATACAGCTC
  umc1269      1.01                 AI941989 
TATATTAGAGGCACCTCCCTCCGT        AGCTGCTTCAGCGACTTTGG
  umc1222      1.02                 G54891 
CTCAGAACAGAAGCCATCAAAAGC        CGTCTTCGTGAGAGACATCCTGT
  umc1144      1.04                 AI629804 
ATGGCCCACTCATCATATCTCTGT        TGTGTTGATTAGCAGCGGATAAAA
  umc1244      1.05                 AW011655 
AACCTCAGCTAAAACTGCTCGTGT        TTGTGCGTGTTTGGAAGTGATAGT
  umc1128      1.07                 AI677212 
TCAATTTTGAGCTATCACTTTCCG        ATTGGTTCCATTGGTTTTGTTGAT
  umc1278      1.07                 AI964577 
GTCGGAGGATGATCCCCTATCTAT        TGCCATAGTACATGTCCGTCATTC
  umc1486      1.07                 AI691689 
CTTCCAGTTCCAGCCTATTGACAC        TTAAGATCTGGCTGGGAAGAAAGC
  umc1298      1.09                 AI947839 
AGCTGAACAAAATAAACGGAACGA        AGGACAAGAAAAAGAAGAAGCACG
  umc1306      1.09                 AI944111 
CGAAACAAAACACCCAGCAGTAGT        CCAGGATGAATAAATCGTATTGCC
  umc1265      2.02                 AI977889 
GCCTAGTCGCCTACCCTACCAAT         TGTGTTCTTGATTGGGTGAGACAT
  umc1108      2.06                 AI714672 
TAAAGAGAGAGGAAACAAGCTGCG        ATGATGAAGCCTCACACATACGAA
  umc1156      2.06                 AI600776 
GCTGTGACGTTTGCTACTACTCCA        TAGCTATGCCTATGGCCCTGATAA
  umc1126      2.08                 AI677556 
CAACAGGGTGAACCCTCTGTACTT        AATATGGTGTTGTGATTTGCATCG
  umc1062      3.09                 AF033263 
GGGATACATGTTCATCATCAGCAG        GTGTTGAGCGGATTCGGATACTAC
  umc1232      4.00                 AW018157 
GGAATTACCACAACAAACTAAACTTGG     AGGCTCTAGCTACCTGGCTACGTT
  umc1276      4.01                 AI966861 
ACGCAATTATTACTGCCACACGTC        CTACCTTGTTCCTAGGGCCGTCTA
  umc1288      4.02                 AI948003 
ATCCGGACAAATTGAACTTTCATC        ATAGATTCAGTGTTGGACCGAGGA
  umc1299      4.06                 AI947817 
CTTGGGTTCTTCTCTCCTATGGGT        CGCTACAAACAAGTGGCGTTTAAT
  umc1329      4.06                 AI881613 
CCTCTCACATCTCCTCTCCCCT          GTGTCGGTGTAGGTCTCCGTCTT
  umc1194      4.07                 AI668269 
ACCACCAGACATGGGAAACTTCT         AAGGCGGACACTACTCTACCCTCT
  umc1051      4.08                 AI372215 
CTGATCTGACTAAGGCCATCAAAC        AATGATCGAAATGCCATTATTTGT
  umc1132      4.08                 AI667779 
CCAGTCCTCATTACGTTCCGAAT         GGAGAGGGACAGAGATAGGGAGAG
  umc1574      4.08- 4.09           AJ011615 
TTTCATGTGCTTGCAGAGTTTGAC        GTCATGCAAGTATCCGCTGTCTT
  umc1284      4.09                 AI941906 
TTCCTCTTTTTAGTAGGGGGTTGG        AAGATGATGGTGGAGAGGATGAAG
  umc1180      4.10                 X57275 
GAAGCCCCTTGAAATGAATGAAC         CGACGTACGTATAGACTCGCTCAG
  umc1240      5.00                 AW017539 
GCAGCAGGTATTGGAAGTCGTAGT        CTGGTCCCTCAGGAAATCCAT
  umc1308      5.00                 AI943731 
GCAGATGGACACAAACAAATGAAG        GCTACTGATGCTGGCAATCTTACA
  umc1092      5.04                 AI396369 
TAAGGCGCAGATGAACTAGCCTAC        CTCCAGTGAGTTCCAGCGCTAT
  umc1098      5.04                 G49467 
ATAACTCCTGCATCTTGTCAGCAA        CACAGGATAGAACCTTCTCAGCAAA
  umc1171      5.04                 AF050129 
ACGTACTACAGATAATGGGCGACG        CGCCGTACCCATGAGTATAATGTAA
  umc1192      5.04                 AI712255 
GATCGAACTGCAGAGGAACAAGAG        CGCTCCACATCCACATCTACAC
  umc1155      5.05                 AI600986 
TCTTTTATTGTGCCCGTTGAGATT        CCTGAGGGTGATTTGTCTGTCTCT
  umc1264      5.05                 AI977895 
AGATAGCTGCACATGGAAACACTT        GACACTAGCCTGGAATCAGTTTCA
  umc1143      6.00                 AI637041 
GACACTAGCAATGTTCAAAACCCC        CGTGGTGGGATGCTATCCTTT
  umc1133      6.01                 AI666201 
ATTCGATCTAGGGTTTGGGTTCAG        GATGCAGTAGCATGCTGGATGTAG
  umc1296      6.06                 AI947918 
CTCTCCCGGCTCTGACCTAGC           GCTGGAGATAGGCATCCAGACAC
  umc1275      7.03                 AI978123 
GTTCGCAGGCCTAGACTCTAATGA        AGTTCTAGTCCCTGGTGATCCTCC
  umc1301      7.03                 AI947719 
AACAGTCAAGCTCACTTTCCGC          CATCCATAAGCTGAAGGAGTGAGG
  umc1342      7.04                 AI944014 
TCTAATCCAATCGACATCGACAGA        TCGCCCTCTTTTCTTTTCTTTTCT
  umc1407      7.05                 AI770831 
AGGCTTACCTCCTGAGAAGCAGTT        AGGCTTAGCATCGGTGGAGAG
  umc1327      8.00                 AI881644 
AGGGTTTTGCTCTTGGAATCTCTC        GAGGAAGGAGGAGGTCGTATCGT
  umc1302      8.03                 AI947718 
ATTTATTCAAACCGACGAAGCAAC        TACAAGCGCTACTGCGATGTCTT
  umc1343      8.04                 AJ238507 
CTTCCTGGCACGTAACATTACCAT        ATCGGTCTTCCAACCAGATCATTA
  umc1121      8.05                 AI691589 
AAAACGACATGTCATCGTCTTCAA        GGGGTCAGGTACAGGGCTAGTAGT
  umc1287      8.05                 AI979450 
ATGGGATGATCAGTCGTTTCAGTC        AGAAGGAGGCCCACTACGAGAG
  umc1268      8.07                 AI973516 
ACGAACAACCTAGCACAGTCCTAAA       CAAGGCGGTTACCAAGTTTACATC
  umc1005      8.08                 G42329 
TTTGATCACAGACTTATCCCTGTT        CTAATGACGAACCCCTAAAAGGT
  umc1310      9.06                 AI939884 
AACTCCGAGATCTACGACAACAGC        GAGGAAGAGTTGGCCAGGATG
  umc1291     10.01                 AI964426 
CAAGTCGTGATCATGCGTAGGTAG        ACTGCTCCAGGGTGAACTGAAC
  umc1318     10.01                 AI902041 
ACTTCGTCTAGTGTCCCTCCGTT         TGCCAGATTAAAAGCAACACAAGA
  umc1319     10.01                 AI902130 
TGAGAGCCACCTTCTTGAGCTACT        TTCCTTGAAGGCGAAGGTAGGTAT
  umc1312     10.03                 AI932183 
AAAGTTACTGCTGCCAAAGCTGTC        AGATCGAGCGGTGGATATGGT
  umc1336     10.03                 AI861156 
GTACAAATGATAAGCAAGGGGCAG        CTCTGTTTTGGAAGAAGCTTTTGG







More information about the Maize mailing list