determining oligomeric structure of a protein
Roland J Saldanha
rsaldanh at magnus.acs.ohio-state.edu
Thu Mar 3 21:42:04 EST 1994
I am working on the mitochondrial tyrosyl synthetase that functions as both a
synthetase and as a facilitator of group I intron splicing. In characterizing
the protein we find that it elutes from gel filtration columns with an apparent
molecular weight of a tetramer (monomer MW=72,000). However the protein
crosslinks as a dimer with dimethyl suberimidate and glutaraldehyde. This
would suggest a highly elongated structure that has an aberrant mobility
(reflecting the elongated size) in gel filtration.
I would welcome suggestions for other methods for demonstrating the oligomeric
structure of the protein. I am aware that sedimentation analysis is the best
method of approaching this problem but do not have access to an analytical
ultracentrifuge and would welcome collaborative offers from anyone who has a
machine.
We would also like to try native page but the protein is very basic (computer
calculated pI of 10.3). I would thus welcome suggestions for native gels of
basic proteins and suitable standards for basic proteins.
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