Software for sequence alignment?

Paul Davis paul at
Wed Mar 30 20:05:24 EST 1994

I'm posting this on behalf of a friend.

She is working on the mammalian D-loop of mitochondrial DNA and is looking
for a program that finds optimal sequence alignment and assigns gaps.

It would be good if the software also does multiple alignments of both
closely and distantly related species.

If anyone out there has any suggestions, please email me at
karyn at

I will post a summary.



Karyn Davis
karyn at

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