SmaI/XmaI digests

rpgrant at molbiol.ox.ac.uk rpgrant at molbiol.ox.ac.uk
Wed Nov 16 05:30:34 EST 1994


In article <9411142223.AA04169 at calvin.jci.tju.edu>, P_Norton at CALVIN.JCI.TJU.EDU (Dr. Pamela Norton) writes:
> Bionetters,
> 
>         As the subject line says, we have been having terrible problems
> getting  a SmaI fragment re-subcloned; 


dum-te-dum....

>  
>         I am literally tearing my hair out over this one. Does anyone know
> whether Sma tends to nibble 5' or 3' ends? In other words, would it help if
> we try to refill any nibbled ends before ligation? I'm thinking of

Pam,

SmaI is a B****r of an enzyme for uncontrolled digestion of the blunt ends it 
produces.  My advice is to digest with a _minimum_ amount of enzyme for the 
_minimum_ amount of time - for plasmids that works out at 2 X overdigestion 
and 1 h at 25C  <---- note the temperature!!  Then run some on a gel to check 
you've got digestion, and it is best to then do a prep gel to retrieve 
digested insert.  Don't worry about any that hasn't cut, it's not worth the 
hassle in the long run.
And again, I'd use BSA (0.15 mg/ml) and spermidine (2mM) in the rx buffer.

Best of luck,

-- 
Richard P. Grant
University of Oxford, Nuffield Department of Obstetrics and Gynaecology
John Radcliffe Hospital Maternity Department, Headington
OXFORD OX3 9DU. UNITED KINGDOM.
rpgrant at molbiol.ox.ac.uk       <><                FAX +44 1 865 69141



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