extract & translate exons

Martin Leach leach at bu.edu
Wed Apr 26 22:59:10 EST 1995


Bob.Gross at Dartmouth.EDU (Robert H. Gross) wrote:
>Hi folks-
>

>Has anyone done this? Does anyone have any suggestions on how we might
>go about getting a database of translated exon sequences? (this would
>actually be peptide fragments). Any help would be appreciated. Thanks
>in advance

I went to Entrez at:

http://atlas.nlm.nih.gov:5700/Entrez/version2/nucleotide.html

and typed in EXON as the query....

it found 17507 documents..upon retrieving them...here are the first few
---------------------

Display all Sequence reports, GenBank reports, FASTA reports, ASN.1 
reports, nucleotide
neighbors, MEDLINE links, or protein links.

           the  for the selected articles.


Warning: only 200 document summaries are being displayed out of 17057 
total entries.

     BT1SVSP 
       B.taurus exon 1 for bovine seminal vesicle secretory protein 
SVSP109 signal peptide
       (View Report format, GenBank format, FASTA format, ASN.1 format, 
1 MEDLINE link
       , or 1 Nucleotide neighbor )

     BT2OXOC 
       B.taurus gene for 2-oxoglutarate carrier protein (View Report 
format, GenBank format,
       FASTA format, ASN.1 format, 1 MEDLINE link , 1 Protein link , or 
2 Nucleotide
       neighbors )

     BT2SVSP 
       B.taurus exon 2 for bovine seminal vesicle secretory protein 
SVSP109 (View Report
       format, GenBank format, FASTA format, ASN.1 format, 1 MEDLINE 
link , or 1
       Nucleotide neighbor )
-------------------------

does this help

ciao

Martin



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