Where are codon pref. tables?
Braudel Maqueira soporte
gusano at CUMANA.SUCRE.UDO.EDU.VE
Wed Jul 12 17:22:25 EST 1995
x:I am interested in downloading some codon preference tables, and don't know
x:where to find them. Can anyone point me in the right direction? Thanks.
x: tracy
x:
x:Thomas T. Aquilla, Ph.D. .***. .***. .***. .***.
x:Molecular Physiology and Biophysics * | | | * * | | | * | | | *
x:University of Vermont Medical College* * | | | * * | | | * * | | | *
x:Health Science Complex, Given E-201* * | | | * | | | * * | | | *
x:Burlington, VT 05405-0068 '***' '***' '***' '***'
x:
x:
Hi, there are some codon usage tables on ftp.bio.indiana.edu
in the directory /molbio/codon. Log on as anonymous and...
... the tables availables are:
File Name Organism/Organelle
========== ======================================================
ALGAE.COD Chlorella sp., Chlamydomonas sp., & Euglena sp. (Green Algae)
anopheles.codons MOSQUITO ANOPHELES GAMBIAE
ASN.COD Aspergillus nidulans
ATH.COD Arabidopsis thaliana
BLY.COD Hordeum vulgare (Barley)
BMO.COD Bombyx mori (Silk Moth)
BOV.COD Bos taurus (Cow)
BSU.COD Bacillus subtilis
CEL.COD Caenorhabditis elegans
CHI.COD Chironomus sp.
CHK.COD Gallus sp. (Chicken)
DDI.COD Dictyostelium discoideum
DRO.COD Drosophila melanogaster
ECO.COD Escherichia coli
HAM.COD Cricetulus sp. & Mesocricetus sp. (Hamster)
HUM.COD Homo sapiens
KPN.COD Klebsiella pneumoniae
MAC.COD Macaca sp
MUS.COD Mus sp. (Mouse)
MZE.COD Zea mays (Maize)
MZECP.COD Zea mays chloroplast (Maize)
NEU.COD Neurospora crassa
NGO.COD Neisseria gonorrheae
PEA.COD Pisum sativum (Pea)
PET.COD Petunia sp.
PFA.COD Plasmodium falciparum
PHV.COD Phaseolus vulgaris (Lima bean)
POT.COD Solanum tuberosum (Potatoe)
PSE.COD Pseudomonas sp.
RAB.COD Oryctolagus sp. (Rabbit)
RAT.COD Rattus sp. (Rat)
RHM.COD Rhizobium meliloti
RIC.COD Oryza sativa (Rice)
SHP.COD Ovis sp. (Sheep)
SLM.COD Physarum polycephalum
SOY.COD Glycine max (Soybean)
STA.COD Staphylococcus aureus
STY.COD Salmonella thphimurium
SUS.COD Strongylocentrotus purpuratus
TOB.COD Nicotiana tabacum (Tobacco)
TOBCP.COD Nicotiana tabacum chloroplast (Tobacco)
TOM.COD Lycopersicon esculentum (Tomato)
TRB.COD Trypanosoma brucei
WHT.COD Triticum aestivum (Wheat)
XEL.COD Xenopus laevis
YSC.COD Saccharomyces cerevisiae
YSCMT.COD Saccharomyces cerevisiae mitochondrion
YSP.COD Schizosaccharomyces pombe
Cheers!
--
_/ _/ _/ _/ _/ _/ _/ _/ [1mBraudel Maqueira Iglesias[0m
_/ _/ _/ _/_/ _/
_/_/ _/ _/ _/ _/ _/ Dpto. de Biologia
_/ _/ _/ _/ _/ Universidad de Oriente - Venezuela
_/ _/ _/ _/ _/ _/ _/ _/ [4me-mail[0m:gusano at sucre.udo.edu.ve
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