Where are codon pref. tables?

Braudel Maqueira soporte gusano at CUMANA.SUCRE.UDO.EDU.VE
Wed Jul 12 17:22:25 EST 1995


x:I am interested in downloading some codon preference tables, and don't know
x:where to find them. Can anyone point me in the right direction? Thanks.
x:    tracy
x:
x:Thomas T. Aquilla, Ph.D.         .***.   .***.           .***.   .***.
x:Molecular Physiology and Biophysics    * | | | *       * | | | * | | | *
x:University of Vermont Medical College*   * | | | *   * | | | *   * | | | *   
x:Health Science Complex, Given E-201*       * | | | * | | | *       * | | | *
x:Burlington, VT 05405-0068    '***'           '***'   '***'           '***'
x:
x:

	Hi, there are some codon usage tables on ftp.bio.indiana.edu
in the directory /molbio/codon. Log on as anonymous and...

 ... the tables availables are:


File Name       Organism/Organelle
==========      ======================================================
ALGAE.COD       Chlorella sp., Chlamydomonas sp., & Euglena sp. (Green Algae)
anopheles.codons MOSQUITO ANOPHELES GAMBIAE
ASN.COD         Aspergillus nidulans
ATH.COD         Arabidopsis thaliana
BLY.COD         Hordeum vulgare (Barley)
BMO.COD         Bombyx mori (Silk Moth)
BOV.COD         Bos taurus (Cow)
BSU.COD         Bacillus subtilis
CEL.COD         Caenorhabditis elegans
CHI.COD         Chironomus sp.
CHK.COD         Gallus sp. (Chicken)
DDI.COD         Dictyostelium discoideum
DRO.COD         Drosophila melanogaster
ECO.COD         Escherichia coli
HAM.COD         Cricetulus sp. & Mesocricetus sp. (Hamster)
HUM.COD         Homo sapiens
KPN.COD         Klebsiella pneumoniae
MAC.COD         Macaca sp
MUS.COD         Mus sp. (Mouse)
MZE.COD         Zea mays (Maize)
MZECP.COD       Zea mays chloroplast (Maize)
NEU.COD         Neurospora crassa
NGO.COD         Neisseria gonorrheae
PEA.COD         Pisum sativum (Pea)
PET.COD         Petunia sp.
PFA.COD         Plasmodium falciparum
PHV.COD         Phaseolus vulgaris (Lima bean)
POT.COD         Solanum tuberosum (Potatoe)
PSE.COD         Pseudomonas sp.
RAB.COD         Oryctolagus sp. (Rabbit)
RAT.COD         Rattus sp. (Rat)
RHM.COD         Rhizobium meliloti
RIC.COD         Oryza sativa (Rice)
SHP.COD         Ovis sp. (Sheep)
SLM.COD         Physarum polycephalum
SOY.COD         Glycine max (Soybean)
STA.COD         Staphylococcus aureus
STY.COD         Salmonella thphimurium
SUS.COD         Strongylocentrotus purpuratus
TOB.COD         Nicotiana tabacum (Tobacco)
TOBCP.COD       Nicotiana tabacum chloroplast (Tobacco)
TOM.COD         Lycopersicon esculentum (Tomato)
TRB.COD         Trypanosoma brucei
WHT.COD         Triticum aestivum (Wheat)
XEL.COD         Xenopus laevis
YSC.COD         Saccharomyces cerevisiae
YSCMT.COD       Saccharomyces cerevisiae mitochondrion
YSP.COD         Schizosaccharomyces pombe


			Cheers!
-- 

   _/ _/ _/    _/       _/   _/ _/ _/     Braudel Maqueira Iglesias
          _/  _/ _/   _/_/     _/            
     _/_/    _/  _/ _/ _/     _/              Dpto. de Biologia
         _/ _/    _/  _/     _/       Universidad de Oriente - Venezuela
_/ _/ _/   _/        _/  _/ _/ _/    e-mail:gusano at sucre.udo.edu.ve 



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