RNA secondary structure

Tom Vink tvink at xs4all.nl
Fri Feb 28 06:10:45 EST 1997


"A. Kumar" <akumar at blue.weeg.uiowa.edu> wrote:

>Is there a program/software package that can predict the secondary
>structure of mRNA given the sequence ? The mRNA I am interested in
>undergoes differential splicing at the 5' untranslated region, and I wish
>to find out if this leads to difference in translatability and differences
>in secondary structure.
>Thanks.
>Ashish Kumar


> 
>		   WORKPLACE	        	  DEN
>		
>        Dept. of Anatomy and Cell Biology,     735 Michael St. Apt 34
>	College of Medicine,	               Iowa City
>	University of Iowa,	               IA 52246-5523
>	Iowa City, IA 52242

>	Dial (319)335-7739                     (319)338-0529

>		e : ashish-kumar at uiowa.edu


>	
I have done the same thing using the Rna prediction server of M.Zuker
and the RNADraw program. If you want any details, mail me.

Tom





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