Good alignment program?

[Dr A.H.M. Van Vliet]

Dear Mike,

I have tried several alignment programs, and so far if it comes to
aligning, I liked Multalin the best; its output options are however
terrible. I actually align them in Multalin and transfer them to clustal
for a "usable" output.

Unfortunately the Multalin program is not shareware, but commercial. If
you're interested I should be able to find out where to get it

hope this helps

Arnoud