Good alignment program?
sathish at BIOKEMI.SU.SE
Wed Jan 15 07:25:07 EST 1997
I used to use Geneworks on Macintosh. Unfortunately it takes time to
complete the alignment and requires lots of memory if you try aligning
long stretches of DNA,RNA or prtoteins. A Power Macintosh is highly
I now routinely use PileUp in GCG (in a Unix machine), as it is fast and
Sometimes I use the netsite, http://www.ibc.wustl.edu/msa.html , to
perform small alignments. It probably uses an alogorithm similar to
To get neat publishable quality outputs of my alignment, I use the
netsite, http://ulrec3.unil.ch/software/BOX_form.html .
Disclaimer: I have no gain, monetary or otherwise, with any of the
products that I have mentioned above. Just a user.
Hope this helps.
P. Sathish Ph. D.
Department of Biochemistry,
Arrhenius Laboratories for Natural Sciences,
S 106 91 Stockholm,
Phone: +46 8 16 2464
Fax: +46 8 15 3679
E-mail: sathish at biokemi.su.se
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