efficient use of gcg
John A. Newitt
newitt at nih.gov
Tue Jul 22 17:36:28 EST 1997
In article <01BC943C.EC4625A0.mdorbell at es.co.nz>,
"diane at phyton.otago.ac.nz" <diane at phyton.otago.ac.nz> wrote:
> I would like to search a large number of sequences to determine their
> susceptibility to being cut by two restriction digests.
> I know that the map command can be used to search a particular sequence to
> find restriction digest sites but is there a command that I can use to
> search multiple sequences at once? It seems pretty tedious to have to
> search each sequence individually for the same enzyme sites.
I believe you can use the FINDPATTERNS program in GCG to locate the
restriction sites. You can search multiple sequences, even whole databases
at a time.
John A. Newitt, Ph.D. | <newitt at nih.gov>
National Institutes of Health | FAX: 301-402-0387
Bethesda, Maryland USA |
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