Sequence Alignment Program Needed
morgen at coltrane.gnets.ncsu.edu
Fri Jun 27 10:01:06 EST 1997
books at mcvax2.d48.lilly.com wrote:
>I need a program which can align two DNA seqeunces 9 kb long. Is there a
>program that can to this? Thanks DPSMITH
A detailed description of the method including an application
to long DNA sequences is given in
Morgenstern, B., Dress, A., and Werner, T. 1996.
Multiple DNA and protein sequence alignment based on
Proc. Natl. Acad. Sci. 93, 12098 - 12103.
As described in this paper, the program was able to detect functional
sites in otherwise unrelated DNA sequences of length > 7 kb.
DIALIGN executables for various UNIX platforms (including LINUX)
together with a detailed user guide and a test example are available
The program is very easy to use and online help is provided
at any input level.
If you are not able to install the program on your computer,
you may mail me your sequences and I will do the alignment
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