ORF without a particular amino acid ???

Cornelius Krasel krasel at wpxx02.toxi.uni-wuerzburg.de
Tue Mar 18 04:52:42 EST 1997


bb1dopeg (bb1dopeg at lucano.uco.es) wrote:
> Is it possible to search GenBank DNA sequences for, say, ORF without
> Arg or other particular amino acid? Any commercial software available?
> As far as we know, the GCG/Wisconsin package cannot perform such task.

I think you could perform this task with FINDPATTERNS from the GCG
package for searching protein databases. For DNA sequences, you
would need TFINDPATTERNS from the EGCG package (which is not out
yet for version 9.0 of GCG, so if you are using this one, you are
out of luck).

--Cornelius.

-- 
/* Cornelius Krasel, U Wuerzburg, Dept. of Pharmacology, Versbacher Str. 9 */
/* D-97078 Wuerzburg, Germany   email: phak004 at rzbox.uni-wuerzburg.de  SP3 */
/* "Science is the game we play with God to find out what His rules are."  */



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