Pub Quality Seq Comparison?

[Chris Kafer]

Or you could use Boxshade on the web.  You must supply the sequences already 
aligned.

http://ulrec3.unil.ch/software/BOX_form.html

You should also put the following URL in your bookmarks.  Links to more 
analysis tools than one could ever hope to use!

http://www.public.iastate.edu:80/~pedro/research_tools.html



In article <3438DAB9.5072 at sci.nwfsc.noaa.gov>, Karen Peck-Miller 
<kpeck-miller at sci.nwfsc.noaa.gov> wrote:
>I need to make a publication quality figure, showing an allignment 
>between my cDNA sequence and other related genes -- one that draws 
>boxes around the nucleotides that are different between the sequences, 
>etc.  I have a Mac, and have been using MacDNAsis for everyday 
>comparisons, but it doesn't seem to be able to do the publication 
>quality job that I need.
>
>Could anyone suggest DNA analysis software that could do this?  Thanks 
>in advance.
>
>Karen A. Peck-Miller, Ph.D.
>National Marine Fisheries Service
>Seattle, WA
>
>Karen.A.Peck-Miller at noaa.gov

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