HELP WANTED: Trouble with ligation
Dr. Dr. habil U. Wernery
microbio at emirates.net.ae
Thu Sep 18 11:24:06 EST 1997
I am trying to set up a genomic library of camel DNA using SK+ vector.
Unfortunately, I have had no luck in obtaining recombinant plasmids.
My approach involves restriction of SK+ with BamHI followed by ligation
to 1-2 kb fragments of genomic camel DNA generated by complete digestion
with MboI.
Is this a suitable approach? I had set up five ligation reactions as
follows:
Tube #1: dephosphorylated vector only (negative control)
Tube #2: vector that was linearized but not dephosphorylated (positive
control)
Tube #3: dephosphorylated vector + 1-2 kb fragments + 15% PEG
(polyethylene glycol)
Tube #4: dephosphorylated vector + 1-2 kb fragment
Tube #5: dephosphorylated vector + 1-2 kb fragments + 25% PEG
Tube #6: dephosphorylated vector + pUC 19 control plasmid (for
transformation efficiency determination)
The tubes were made up to volume (15 microlitres) with water, ligase
buffer, and T4 DNA ligase. The mixtures were incubated for 5 hours at 20
degrees Celsius and subsequently transformed into competent DH5 alpha
cells (from Gibco, BRL). They were then plated on LB-Amp plates and
incubated at 37 degrees Celsius overnight.
Examination of the plates the next day revealed that transformation
efficiency was good (tube 6). As expected the tube with the
dephosphorylated vector produced no colonies (tube 1). Tube 2 containing
the linearized but not dephosphorylated vector control produced colonies.
This would indicate that the dephosphorylation, ligation and
transformation controls worked.
How can I account for the fact that no colonies were observed for
ligation of vector with the genomic DNA? I would be grateful if someone
can recommend an alternative approach or suggest improvement in the above
set up.
Thank you very much for your time and consideration. Please reply by
e-mail to (Attn: Maxy Mariasegaram):
microbio at emirates.net.ae
Sincerely,
Maxy Mariasegaram
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