Assembling EST sequences

Thomas Newman newmant at pilot.msu.edu
Mon Apr 13 09:21:58 EST 1998


In article <6gm3jg$iuq at gazette.bcm.tmc.edu>, simonh at bcm.tmc.edu (Simon
Hoffenberg) wrote:

> Dear netters,
> 
> Does anybody know of an Internet service that will allow automatic
> assembling of sequences deposited in GenBank and/or EST databases?
> UniGene from NCBI allows clustering of EST sequences but do not provide the
> consensus sequence.
> Thanks for your advice.
> Simon Hoffenberg
> Baylor College of Medicine
> Houston, TX
> simonh at bcm.tmc.edu

I do not know of a service, but the software is available from TIGR at
their ftp site:  ftp://ftp.tigr.org/pub/software/     The file is the
TIGR_assembler and instructions are in the readme file.  Hope this helps.

Tom Newman



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