mRNA secondary structure plots

U. Gausmann ugau at mti-n.uni-jena.de
Wed Jun 24 02:35:37 EST 1998


--------------948B16D7280ADADBA8224988
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit

> Hi all,
> I'd like to draw some mRNA secondary struture plots because I want
> to find out where in the structure some antisense oligos might bind.
> know about a tool in the GCG package that I can output to a HPGL
> file.
>
> Is anyone aware of a tool to produce a RASMOL file or another
> optically more impressing output?
>
> Thanks for all input,
> Wolfgang
>


Hi Wolfgang,

I do not know if the output is more impressing but
maybe the mfold server is helpful.

http://www.ibc.wustl.edu/~zuker/rna/

Ulrike


--
Ulrike Gausmann         | D-07743 Jena
Institut fuer Anatomie  | Germany
Anatomie II             | Tel. +49 (0)3641 938553
Teichgraben 7           | email ugau at mti-n.uni-jena.de


--------------948B16D7280ADADBA8224988
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit

<HTML>
<TT>> Hi all,</TT>
<BR><TT>> I'd like to draw some mRNA secondary struture plots because I
want</TT>
<BR><TT>> to find out where in the structure some antisense oligos might
bind.</TT>
<BR><TT>> know about a tool in the GCG package that I can output to a HPGL</TT>
<BR><TT>> file.</TT>
<BR><TT>></TT>
<BR><TT>> Is anyone aware of a tool to produce a RASMOL file or another</TT>
<BR><TT>> optically more impressing output?</TT>
<BR><TT>></TT>
<BR><TT>> Thanks for all input,</TT>
<BR><TT>> Wolfgang</TT>
<BR><TT>></TT>
<BR><TT></TT>&nbsp;<TT></TT>

<P><TT>Hi Wolfgang,</TT><TT></TT>

<P><TT>I do not know if the output is more impressing but</TT>
<BR><TT>maybe the mfold server is helpful.</TT><TT></TT>

<P><TT><A HREF="http://www.ibc.wustl.edu/~zuker/rna/">http://www.ibc.wustl.edu/~zuker/rna/</A></TT><TT></TT>

<P><TT>Ulrike</TT>
<BR><TT></TT>&nbsp;<TT></TT>

<P><TT>--</TT>
<BR><TT>Ulrike Gausmann&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
| D-07743 Jena</TT>
<BR><TT>Institut fuer Anatomie&nbsp; | Germany</TT>
<BR><TT>Anatomie II&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
| Tel. +49 (0)3641 938553</TT>
<BR><TT>Teichgraben 7&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
| email ugau at mti-n.uni-jena.de</TT>
<BR><TT></TT>&nbsp;</HTML>

--------------948B16D7280ADADBA8224988--




More information about the Methods mailing list