5'UTR sequence analysis - HELP!

Sergio sergioal at solea.quim.ucm.es
Wed Apr 5 10:45:54 EST 2000


Hi,
i never used this site, but maybe it's interesting;

http://dot.imgen.bcm.tmc.edu:9331/seq-search/gene-search.html

i hope this helps..

Sergio

topalli at my-deja.com wrote:

> Hi,
>
> I have several kb of the 5' untranslated region of a gene.  Is there any
> software out there that can do some preliminary analysis of this
> sequence for me?  Is there any such resources in the Web.
>
> Specifically I'd like to look for response elements, transcription factor
> binding sites, TATA, CAAT boxes and the like.  It seems like a pretty
> basic problem and a fairly mechanical process so I would be surprised if
> there were not publicly available resources.
>
> Presently I am looking for such things by hand but have found this method
> to be unreliable, both because the bias of the observer (myself) possibly
> tipping the results in one direction and my inability to search for all
> such elements tipping results in the other.
>
> I'd really appreciate the help as I am on a deadline to present my very
> preliminary results.  Reply here and/or my regular email address at
> ilir at gis.net.
>
> Thanks a lot.
>
> Sent via Deja.com http://www.deja.com/
> Before you buy.





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