Freeware to detect small repeats in a sequence

[Anders Gorm Pedersen]

Mathieu Ingouff wrote:

> I would like to see if i have small repeats (ca 50 bp, I know its
> sequence from others genes) in the 5'UTR of my genes.  With Clustlaw it
> only show the best alignment. Is there any freeware for Mac where we can
> play with the degeneracy...or gaps.....and get the different
> possibilities.

You might find the Tandem Repeats Finder useful:

  http://c3.biomath.mssm.edu/trf.html


Best,
Anders

--
Anders Gorm Pedersen, Ph.D. (gorm at cbs.dtu.dk)
Technical University of Denmark