software to link sequencing fragments

Dr N.I. Leaves nleaves at hgmp.mrc.ac.uk
Thu Aug 2 02:43:26 EST 2001


On 2 Aug 2001, it was written:

> hi,all,
> I want to find a software which can help me to link different sequencing
> fragments(forward and reverse) into a consensuse sequence. I have tried
> DNASIS 2.5. But it dosen`t work well.
> thank you very much.
> 

Depends if you have sequence traces or just a text file of sequence.

For the sequence traces try Phred/Phrap, Consed, or something simple like
sequence navigator.

For text files of sequence try GCG or TIGR-assembler. 

HTH

Nick Leaves PhD
Mouse Sequencing
HGMP-RC
Cambridge UK




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