Sequence scrambler

Simon Andrews simon.andrews at
Fri Jun 28 04:24:25 EST 2002

Emir Khatipov wrote:
> Guys,
> It drives me crazy that I cannot remember where I saw a webtool that
> scrambles a given peptide sequence. That was not a primary function of that
> tool, and most probably that was a motif search program. Could someone
> remind me where on the web I could scramble the sequences. If you have other
> suggestions how I could do that without the web, please share your
> knowledge. I need to scramble about 60 peptides, and would hate to do that
> "by hand", saying nothing that the latter would introduce an "educated
> bias".

I think the EMBOSS Shuffleseq program should do what you want.  There
are a few web interfaces to it around, such as:

Hope this helps


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