Designing degenerate primers

Chang Zhu czhu at
Tue Sep 21 12:26:25 EST 2004

Try Primo Degenerate:

You can use sinlge protein sequenence, multiple alignments of DNA or
protein sequences as input.


webmaster at (Andrea) wrote in message news:<1eb3f133.0409132239.519bbcaf at>...
> Hi Tome,
> > I am sure it must be easy to do this with some kind of application 
> > somewhere out there! Make a multiple alignment, save the consensus 
> > sequence and directly use it for primer design! Or am I missing 
> > something obvious?
> Try this:
> CODEHOP: COnsensus-DEgenerate Hybrid Oligonucleotide Primers
>   Andrea

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