Designing degenerate primers

Chang Zhu czhu at changbioscience.com
Tue Sep 21 12:26:25 EST 2004


Try Primo Degenerate: 

http://www.changbioscience.com/primo/primod.html

You can use sinlge protein sequenence, multiple alignments of DNA or
protein sequences as input.

Chang


webmaster at bioinformatik.de (Andrea) wrote in message news:<1eb3f133.0409132239.519bbcaf at posting.google.com>...
> Hi Tome,
> 
> > I am sure it must be easy to do this with some kind of application 
> > somewhere out there! Make a multiple alignment, save the consensus 
> > sequence and directly use it for primer design! Or am I missing 
> > something obvious?
> 
> Try this:
> 
> CODEHOP: COnsensus-DEgenerate Hybrid Oligonucleotide Primers
> http://blocks.fhcrc.org/blocks/codehop.html
> 
>   Andrea



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