Protein Homology modeling

GysdeJongh jongh711 at
Thu Apr 20 06:11:38 EST 2006

"Maryam" <mzargh at> wrote in message 
news:mailman.657.1145510478.16885.methods at
>I was wondering if anybody is familiar with the protein homology modeling? 
>which software is more reliable? and how it works for a protein in form of 
>  Thanks

Hi Maryam ,
I used Modeller 8v1

The Modeller Home Page :

The Documentation is here :

The FAQ archive is here : usage/

The models can be viewed by any program that reads the PDB format, such as 
Chimera , Rasmol , SwissPdbViewer etc

This is a command line program free for academic use
It works very beautifully
If your problem is not too big than you can use their webinterface

There is also a commercial version with a windows GUI


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