Protein Homology modeling

GysdeJongh jongh711 at planet.nl
Thu Apr 20 06:11:38 EST 2006


"Maryam" <mzargh at yahoo.ca> wrote in message 
news:mailman.657.1145510478.16885.methods at net.bio.net...
>I was wondering if anybody is familiar with the protein homology modeling? 
>which software is more reliable? and how it works for a protein in form of 
>hexamer.
>  Thanks

Hi Maryam ,
I used Modeller 8v1

The Modeller Home Page :
http://salilab.org/index.html

The Documentation is here :
http://salilab.org/modeller/documentation.html

The FAQ archive is here :
http://salilab.org/archives/modeller usage/

The models can be viewed by any program that reads the PDB format, such as 
Chimera , Rasmol , SwissPdbViewer etc

This is a command line program free for academic use
It works very beautifully
If your problem is not too big than you can use their webinterface

There is also a commercial version with a windows GUI

hth
Gys





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