About DNA sequencing

kou via methods%40net.bio.net (by koustubhvaze2 from googlemail.com)
Sun Oct 7 12:12:42 EST 2007

Hello everybody,

 I am PhD stdent and working on circadian rhythms in Drsophila.

I am planning to do sequencing of period locus for detecting

I have a very basic question about sequencing :

After sequencing, entire sequence is not accurate. stretch of sequence
immediately after primers is not accurate.
So my question is

How to choose accurate sequence ?
 I mean what should be the start  point and end point  of accurate
sequence with respect to primer position?


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