Bacterial Codon Usage Statistics

Tom Dougherty Doughert at synapse.bms.com
Mon Mar 17 11:21:03 EST 1997


In article <3324574A.59DF at bangor.ac.uk>, "P.F.Ganderton" <bsu244 at bangor.ac.uk> says:
>
>Hi Folks,
>        I need to analyse the codon usage of a regulatory gene from
>Pseudomonas. I am looking for a source of a codon usage table for this
>genus which has an associated analysis of variances for each entry. I
>would also like to know if there is a codon usage table floating around
>for "Eubacteria" or "Gram negatives" or something like that.
>                                                Richie
>===================================================================
>Richard C. Ogden,               E-mail: r.c.ogden at bangor.ac.uk
>School of Biological Sciences,
>University of Wales, Bangor,    Tel:01248-351151  ext. 2368
>GWYNEDD. LL57 2UW. UK.
>===== http://oracle.bangor.ac.uk/sbs/research/biodegradation/ =====

Suggest you check the URL below that was listed in a post by David Mullen.
I checked out the suggested URL and it is very helpful with regard to 
procaryotic codon usage tables, with statistics.  URL is:

http://www.dna.affrc.go.jp/%7Enakamura/

Tom Dougherty

 



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