codon usage tool

Don Walthers donwalthers at hotmail.com
Wed Oct 18 20:08:17 EST 2000


Thanks for the info. My sequence has not been submitted yet so I can't use
the first tool. I was hoping for something that could take the CDSs from a
genebank file and get codon usage for all of them. But I guess I can append
the ORFs into a single file.

--
Don Walthers  donwalthers at hotmail.com
BS Microbiology U of Illinois at UC, 1996
PhD Microbiology U of Idaho, soon
Our gene pool needs a little chlorine.
"Emir Khatipov" <ekhatipo at NOSPAMmidway.uchicago.edu> wrote in message
news:n24H5.154$x3.2473 at uchinews...
> codon usage tables for the critter of your choice:
> http://www.kazusa.or.jp/codon/
>
> to make a table for your gene:
> http://www.kazusa.or.jp/codon/countcodon.html
>
> Or download a DOS program CodonW. Do the search for CodonW. You will also
> get links for online CodonW
>
> - Emir
>
>
>
> "Don Walthers" <donwalthers at hotmail.com> wrote in message
> news:8sie3t$i3q$1 at kestrel.csrv.uidaho.edu...
> > Hello,
> > Does anyone know of a tool (software or web-based) that can determine
> codon
> > usage frequency on an entire genome (~50kb) from a genebank file
> (generated
> > by VectorNTI)?








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