Program to calculate Hamming distances.

oconnor at GEODE.BIOTECH.CDC.GOV oconnor at GEODE.BIOTECH.CDC.GOV
Mon Apr 19 08:09:02 EST 1993


Hello:

I posted this to bionet.software and did not receive a response, maybe
someone who reads this group can help.  I am trying to obtain a program
(for DOS or Windows) that can generate a matrix of Hamming distances
(i.e. nucleotide differences and insertions-deletions are weighted
equally) from a multiple sequence alignment.  Does anyone know of a 
program (freeware preferred) which will do this?  Thanks.

Steve

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Steve O'Connor                      National Center for Infectious Diseases, CDC
Pertussis Laboratory                Mail Stop D-11
Phone:  404-639-2822   Fax:  -3296  Atlanta, GA   USA
OCONNOR at GEODE.BIOTECH.CDC.GOV
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