aminoacid alignment

[Joe Mack]

In article <1993Dec9.152054.16404 at galileo.cc.rochester.edu> madda at troi.cc.rochester.edu (Warren Lathe) writes:
>
>
>Along the lines re: Dr. Farmers request for a good alignment program,  I was
>wondering if anyone knew of a good program for aligning amino acid sequences.
>I would prefer something that I could ftp or obtain easily, but any good 
>program will do.    I am specifically looking for a program that does not use
>chemical properties of amino acids but rather a mutation matrix to align, such
>as the mutation matrix in Gonnet et al, Science 256: 1443-1445.
>
>            
Try Clustal (now in Version V). I got mine by asking the archie server.
Joseph MACK
mack at ncifcrf.gov