transition/transversion calc?

zharkikh at GSBS18.GS.UTH.TMC.EDU zharkikh at GSBS18.GS.UTH.TMC.EDU
Sat Aug 13 23:56:58 EST 1994


Tom,

I have a program that estimates the number of transitions and transversions
for each pair of aligned sequences, using Kimura's (1980) 2-parameter
method. The results are represented as a matrix with transitions above
and transversions below the diagonal. That is what you want?
If so, the progran is "matdisk2", it is written in almost plain C
and is reachable through anonymous ftp from
	gsbs18.gs.uth.tmc.edu
directory
	pub/zharkikh/bootstrap
files
	matdisk2.c
	reads.cc
	read-set.cc
	distance-K2.cc


Andrey



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