Alignment programs

Dave Carmean carmean at
Fri Dec 15 21:28:09 EST 1995

In article <DJK4In.ELC at>, mes at (Mark
Siddall) wrote:  [much interesting and useful material here and in related

> However because MALIGN is so thorough it takes a lot of memory and
> processor time.
> So you have a choice... get your alignment quick or be rigorous in your
> science.

I find it interesting that there is no discussion here of using homology
(such as secondary structure) to align sequences.  Karl Kjer has been
working on this aspect of alignment.

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