Ambiguity in RNA/DNA alignments

Mark Siddall mes at
Thu Dec 21 00:37:15 EST 1995

In article <carmean-2012951617520001 at> carmean at (Dave Carmean) writes:
>using equate="A=G" and equate="T=C"  one may do transversion parsimony.

Don't you think this is a little extreme?
Why not just use a variety of Sankoff matrices rather than obliterating
all of the information in transitions?


Mark E. Siddall                "I don't mind a parasite...
mes at                    I object to a cut-rate one" 
Virginia Inst. Marine Sci.                     - Rick
Gloucester Point, VA, 23062

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