WWW / Internet Resources for Multiple Alignment !?

Georg Fuellen fuellen at techfak.uni-bielefeld.de
Thu Feb 16 12:22:34 EST 1995


Dear All,
I'd like to complete the following list of Internet Resources for 
Multiple Alignment. It will be used for a Biocomputing Course offered
for free, as described at the end of this message.
I will post a summary if I'm pointed to other resources.

PLEASE REPORT ANY USEFUL RESOURCES THAT ARE NOT ON THIS LIST !!!!!
PLEASE REPORT ANY USEFUL RESOURCES THAT ARE NOT ON THIS LIST !!!!!
(sorry for shouting, but I'd really like to get a few responses :-)

http://geoff.biop.ox.ac.uk/servers/amas_server.html
AMAS - Analyse Multiply Aligned Sequences

http://ibc.wustl.edu/msa.html
MSA, Calcutating Multiple Alignments.

http://cbrg.inf.ethz.ch/subsection3_1_1.html#SECTION0001100000000000000
AllAll: Calculate Phylogenetic Trees, Alignments and a lot more

http://geoff.biop.ox.ac.uk/papers/rev93_1/rev93_1.html
Protein Sequence Alignment and Database Scanning, by Geoffrey Barton

gopher://s-crim1.dl.ac.uk/00/EMBnet%20Bioinformation%20Resource%20UK/Data%20%26%
20Software/databases/3d_ali/3d_ali.doc
3D-Ali Information File

http://www.embl-heidelberg.de/srs/srsc?-info||ALI
3D-ALI Database Interface

http://www.embl-heidelberg.de/predictprotein/predictprotein.html
The PredictProtein server, utilizing MaxHom Alignments
(Are MaxHom Alignments offered anywhere ??)

http://www.blocks.fhcrc.org/
Detection and verification of protein sequence homology : BLOCKS WWW Server


Thanks a lot for any hints !

***************************************************************************
Also, I'd like to ask whether the following resources are available 
somewhere on the net:

1. The ATLAS interface to sequence data, by which you can retrieve
   a sequence using a suitable subsequence of only a few amino acids.

2. McClure's Multiple Alignment Data (they are supposed to be at
   ftp.embl-heidelberg.de, according to the EMBL File Server News, Number 11,
   but I could not find them).

3. Kececioglu's maximum weight trace data, Reference:
   J. D. Kececioglu, The maximum weight trace problem in multiple sequence
   alignment. In Proc. of the 4th Symp. on Comb. Pattern Matching, LNCS 684,
   pp. 106-119 (1993)
***************************************************************************

best wishes,
  georg
fuellen at dali.Mathematik.Uni-Bielefeld.DE, fuellen at MIT.EDU
  http://www.techfak.uni-bielefeld.de/techfak/persons/fuellen/georgF.html
    Dr Stephen R Covey, The 7 Habits of Highly Effective People, Habit #2:
    Begin With The End In Mind !
For info about a free online Biocomputing Course, to be offered in Summer 1995
under the auspices of GNA-VSNS, please point your WWW/hypertext browser to
http://www.techfak.uni-bielefeld.de/techfak/persons/fuellen/BCDhome.html
Please visit this page before inquiring about the course !




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