Comparison of (phylogenetic) trees

Eric Archer farcher at sdcc3.ucsd.edu
Mon May 29 12:43:00 EST 1995


In article <cgrunau-280595234458 at biog006.riken.go.jp>,
   cgrunau at rkna50.riken.go.jp (Christoph Grunau) wrote:

=|Or how can you copare distance matrix tables?
=|

The best (and only) way that I know of is to run a Mantel
test. This test basically compares the conconcordnance of two
matrices and gives a statistic, 'W' I believe, which is compared
to a distribution of W's from random permutations of one of the
matrices for significance. The only program I know that does a 
Mantel test is NTSYS-PC. 



------------------------------------+-----------------------------------------
Eric Archer                         |  "Marine Biologist?!?!?.... I didn't
Scripps Institution of Oceanography |   even know that WAS a job!"
University of California, San Diego |          - George Costanza
La Jolla, CA 92093 U.S.A.           |
email: farcher at sdcc3.ucsd.edu       |   "Get off the cross, we need the wood."
phone: 619-546-7095                 |          - Tori Amos
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